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methylation minfi illuminahumanmethylation450k.db saliva cell composition

updated 7.2 years ago by Kasper Daniel Hansen 6.5k • written 7.2 years ago by Brian Smith ▴ 120

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Answer: Discrepancy between plot colours during exomeCopy tutorial by Michael Love 37k

I’m not sure why the plot looks this way. You may want to look at one sample at a time. Also note there are more developed tools, I haven’t…

Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Jiping Wang ▴ 70

that's terrific. thanks. thanks for your comment on `pcoverageByTranscript` function as well. yes, we understand it's for transcript. that…

Answer: Help with constructing design matrix for edgeR/limma by Gordon Smyth 45k

If the infertile subpopulations have different expression profiles then you need ``` design <- model.matrix(~Pathology) ``` and not includ…

Comment: edgeR : results from goana and kegga functions show opposite sig. p-value by sharvari gujja ▴ 30

Thank you so much!

Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Hervé Pagès 15k

Hi Jiping, Sorry for the slow response and thanks for providing those details. They allowed me to reproduce the problem and to come up wit…

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Teacher to Michael Love 37k