Bioconductor Salmon

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278

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swish salmon fishpond

updated 11 weeks ago by Michael Love 41k • written 12 weeks ago by Nicholas • 0

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398

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salmon tximport deseq2

updated 6 months ago by Michael Love 41k • written 6 months ago by Kayleigh • 0

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1.4k

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salmon IsoformSwitchAnalyzeR tximport RNASeqData

updated 8 months ago by k.vitting.seerup ▴ 120 • written 8 months ago by elva.gypsophila ▴ 10

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655

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rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

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1.4k

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salmon RUVSeq cqn PCA RNASeq

updated 12 months ago by Michael Love 41k • written 12 months ago by urwah ▴ 10

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1.5k

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salmon edgeR tximport nf-core gene_counts

updated 3 days ago by i.atanasoai • 0 • written 14 months ago by mohammedtoufiq91 ▴ 10

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1.3k

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DESeq2 tximport counts Salmon

updated 7 weeks ago by Michael Love 41k • written 15 months ago by kiqbal • 0

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2.7k

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salmon DESeq2

updated 4 months ago by bella.johnson.2022 • 0 • written 2.3 years ago by Sneha • 0

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2.9k

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tximport dtu salmon TPM rnaseqDTU

written 5.0 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

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Comment: Memory errors using read.bismark? by Peter Hickey ▴ 700

> Only one thing, my data are actually CpG methylation :) No, the file you sent me is CX methylation (i.e. CpA, CpC, CpG, CpT), as is clea…

Comment: DEG with low counts by Rajat • 0

Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…

Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k

To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…

Answer: flowStats Search Error by shepherl 3.8k

We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.

Votes

Answer: Light difference when using coef vs omit a group when compare 3 groups.

C: Add new columns to DESeqResults from text file by matching rownames.

Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

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