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sam
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reset
2
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2
replies
1.7k
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SAM/siggenes: Differential gene expression analysis
SAM
siggenes
microarray
gene expression
sam
8.2 years ago
Brian Smith
▴ 120
2
votes
4
replies
1.6k
views
Interprentation of appropriate statistical test
samr
SAM
siggenes
bioconductor
differential gene expression
10.1 years ago
svlachavas
▴ 840
5
votes
8
replies
6.8k
views
Getting Aligned DNAStringSet from reference and BAM/SAM file(s)
bam
sam
alignment
biostrings
10.1 years ago
ben.ward
▴ 30
1
vote
1
reply
1.6k
views
How to get diff expresion results from sam files
differential gene expression
sam
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
cirisarri95
• 0
2
votes
2
replies
622
views
How to get the final value of the after an automatic method in SAM
microarray
SAM
updated 5.8 years ago by
James W. MacDonald
68k • written 5.8 years ago by
xgt1986627
▴ 10
0
votes
3
replies
1.6k
views
Implementation of SAM statistical technique in R
r
SAM
bioconductor
updated 10.2 years ago by
Simon Anders
★ 3.8k • written 10.2 years ago by
svlachavas
▴ 840
4
votes
4
replies
2.8k
views
Two-class unpaired test using LIMMA
Limma
SAM
differential expression
updated 10.3 years ago by
James W. MacDonald
68k • written 10.3 years ago by
Bade
▴ 310
0
votes
5
replies
2.7k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts
SAM
htseqcounts
updated 20 months ago by
Yang Liao
▴ 450 • written 7.8 years ago by
courtney.stairs
• 0
0
votes
0
replies
1.4k
views
Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
6.6 years ago
ktehmsen
• 0
0
votes
0
replies
1.7k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
9.4 years ago
Fiona
▴ 70
10 results • Page
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Answer: Use of org.Rn.eg.db with GRCr8 reference genome
by
James W. MacDonald
68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column
by
Erika
• 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
Answer: Clarification on GOALL / GO2ALLORFs mapping
by
James W. MacDonald
68k
It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question?
by
DavideSant
• 0
Thank you, this was super useful!
Comment: Error in retrieving clinical data
by
silickas
• 0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Votes
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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