Bioconductor Sam

Showing : sam • reset

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6.6k

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bam sam alignment biostrings

9.9 years ago ben.ward ▴ 30

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2.8k

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Limma SAM differential expression

updated 10.2 years ago by James W. MacDonald 67k • written 10.2 years ago by Bade ▴ 310

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2.6k

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featurecounts SAM htseqcounts

updated 18 months ago by Yang Liao ▴ 450 • written 7.7 years ago by courtney.stairs • 0

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1.6k

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DEXSeq splicing python SAM

9.3 years ago Fiona ▴ 70

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1.6k

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SAM siggenes microarray gene expression sam

8.0 years ago Brian Smith ▴ 120

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1.5k

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r SAM bioconductor

updated 10.0 years ago by Simon Anders ★ 3.8k • written 10.0 years ago by svlachavas ▴ 840

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1.5k

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samr SAM siggenes bioconductor differential gene expression

10.0 years ago svlachavas ▴ 840

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1.4k

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differential gene expression sam

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by cirisarri95 • 0

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1.4k

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SAM samtools pairwisealignment alignment blastn

6.4 years ago ktehmsen • 0

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596

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microarray SAM

updated 5.6 years ago by James W. MacDonald 67k • written 5.6 years ago by xgt1986627 ▴ 10

10 results • Page 1 of 1

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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