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sam
•
reset
5
votes
8
replies
6.0k
views
Getting Aligned DNAStringSet from reference and BAM/SAM file(s)
bam
sam
alignment
biostrings
9.2 years ago
ben.ward
▴ 30
4
votes
4
replies
2.5k
views
Two-class unpaired test using LIMMA
Limma
SAM
differential expression
updated 9.4 years ago by
James W. MacDonald
65k • written 9.4 years ago by
Bade
▴ 310
2
votes
2
replies
489
views
How to get the final value of the after an automatic method in SAM
microarray
SAM
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
xgt1986627
▴ 10
2
votes
4
replies
1.3k
views
Interprentation of appropriate statistical test
samr
SAM
siggenes
bioconductor
differential gene expression
9.2 years ago
svlachavas
▴ 830
2
votes
2
replies
1.4k
views
SAM/siggenes: Differential gene expression analysis
SAM
siggenes
microarray
gene expression
sam
7.3 years ago
Brian Smith
▴ 120
1
vote
1
reply
1.3k
views
How to get diff expresion results from sam files
differential gene expression
sam
updated 8.0 years ago by
Aaron Lun
★ 28k • written 8.0 years ago by
cirisarri95
• 0
0
votes
3
replies
1.4k
views
Implementation of SAM statistical technique in R
r
SAM
bioconductor
updated 9.3 years ago by
Simon Anders
★ 3.7k • written 9.3 years ago by
svlachavas
▴ 830
0
votes
5
replies
2.3k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts
SAM
htseqcounts
updated 9 months ago by
Yang Liao
▴ 380 • written 6.9 years ago by
courtney.stairs
• 0
0
votes
0
replies
1.1k
views
Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
5.7 years ago
ktehmsen
• 0
0
votes
0
replies
1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
8.5 years ago
Fiona
▴ 70
10 results • Page
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Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
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russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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