Bioconductor Sam

Showing : sam • reset

votes

replies

6.6k

views

bam sam alignment biostrings

10.0 years ago ben.ward ▴ 30

votes

replies

2.8k

views

Limma SAM differential expression

updated 10.2 years ago by James W. MacDonald 67k • written 10.2 years ago by Bade ▴ 310

votes

replies

599

views

microarray SAM

updated 5.7 years ago by James W. MacDonald 67k • written 5.7 years ago by xgt1986627 ▴ 10

votes

replies

1.5k

views

samr SAM siggenes bioconductor differential gene expression

10.0 years ago svlachavas ▴ 840

votes

replies

1.6k

views

SAM siggenes microarray gene expression sam

8.0 years ago Brian Smith ▴ 120

vote

1.5k

views

differential gene expression sam

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by cirisarri95 • 0

votes

replies

1.6k

views

r SAM bioconductor

updated 10.0 years ago by Simon Anders ★ 3.8k • written 10.0 years ago by svlachavas ▴ 840

votes

replies

2.6k

views

featurecounts SAM htseqcounts

updated 18 months ago by Yang Liao ▴ 450 • written 7.7 years ago by courtney.stairs • 0

votes

replies

1.4k

views

SAM samtools pairwisealignment alignment blastn

6.5 years ago ktehmsen • 0

votes

replies

1.7k

views

DEXSeq splicing python SAM

9.3 years ago Fiona ▴ 70

10 results • Page 1 of 1

Recent ...

Replies

Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

Votes

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Awards • All

Popular Question to Robert Castelo ★ 3.4k

Popular Question to Robert Ivanek ▴ 750