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sam
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reset
5
votes
8
replies
6.0k
views
Getting Aligned DNAStringSet from reference and BAM/SAM file(s)
bam
sam
alignment
biostrings
9.1 years ago
ben.ward
▴ 30
4
votes
4
replies
2.4k
views
Two-class unpaired test using LIMMA
Limma
SAM
differential expression
updated 9.3 years ago by
James W. MacDonald
65k • written 9.3 years ago by
Bade
▴ 310
2
votes
2
replies
479
views
How to get the final value of the after an automatic method in SAM
microarray
SAM
updated 4.8 years ago by
James W. MacDonald
65k • written 4.8 years ago by
xgt1986627
▴ 10
2
votes
4
replies
1.2k
views
Interprentation of appropriate statistical test
samr
SAM
siggenes
bioconductor
differential gene expression
9.2 years ago
svlachavas
▴ 830
2
votes
2
replies
1.4k
views
SAM/siggenes: Differential gene expression analysis
SAM
siggenes
microarray
gene expression
sam
7.2 years ago
Brian Smith
▴ 120
1
vote
1
reply
1.3k
views
How to get diff expresion results from sam files
differential gene expression
sam
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
cirisarri95
• 0
0
votes
3
replies
1.4k
views
Implementation of SAM statistical technique in R
r
SAM
bioconductor
updated 9.2 years ago by
Simon Anders
★ 3.7k • written 9.2 years ago by
svlachavas
▴ 830
0
votes
5
replies
2.2k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts
SAM
htseqcounts
updated 8 months ago by
Yang Liao
▴ 380 • written 6.9 years ago by
courtney.stairs
• 0
0
votes
0
replies
1.1k
views
Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
5.6 years ago
ktehmsen
• 0
0
votes
0
replies
1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
8.5 years ago
Fiona
▴ 70
10 results • Page
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Comment: Minfi - estimatecellscount
by
clacarion
• 0
Thank you for your response, that's what i was thinking I will try with the rgset only and come back to tell you what's happening ! Best…
Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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