Bioconductor SampleQuality

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limma arrayWeights variance sampleQuality microarray

updated 8.1 years ago by Ryan C. Thompson 7.8k • written 8.1 years ago by svlachavas ▴ 820

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Answer: locateVariant from VariantAnnotation returns wrong results by James W. MacDonald 64k

This is a [known and so far unfixed issue][1]. ``` > mapToTranscripts(snp, intronsByTranscript(TxDb.Hsapiens.UCSC.hg19.knownGene)) GR…

Comment: Result from GSEA for non-model organism not as expected by James W. MacDonald 64k

I asked you in a previous thread to **not add comments to old threads** and instead start a new one. Please follow that advice. It's fine i…

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by James W. MacDonald 64k

This is something you should be able to work out on your own. When you get an error, you have to read it and try to figure out what it mean…

Comment: Subtracting INPUT reads from ChIP read counts. by ann-sophie.gironne • 0

Hi Rory! I'm trying to scale my bigwig files so the visualization on IGV matches what the DiffBind analysis results, being that the sample…

Comment: Ensembl down??? by James W. MacDonald 64k

Yup, they seem to be down. What exactly are you trying to do? There may be other options.

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Comment: Ensembl down???

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