Bioconductor Samples

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samples sampleNumbers DESeq2

written 24 months ago by Lidia • 0

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samples rlog DESeq2

updated 2.4 years ago by Michael Love 41k • written 2.4 years ago by rafaelsolersanblas ▴ 50

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R deseq2 Paired Samples

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by m.wekking • 0

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edger normalization samples comparisons

updated 6.5 years ago by Gordon Smyth 50k • written 6.5 years ago by roser.navarro • 0

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Awards • All

Scholar to Peter Hickey ▴ 740