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minfi methylation idat samplesheet

updated 3 months ago by sci_djw • 0 • written 2.2 years ago by researcher • 0

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Answer: Best practice for quantifying sncRNA by James W. MacDonald 57k

I personally wouldn't use salmon for miRNA transcripts. We have had not completely horrible results using Qiagen's miRNA NGS Seq service, w…

Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by James W. MacDonald 57k

You say you have NA values, but I am not sure that is actually what you mean. It's one thing to have a data set like ``` Subject Time …

Comment: Getting paralogus genes from biomart for mouse by Kevin Blighe 3.2k

This user recently posted here: https://support.bioconductor.org/p/9138593/#9138597

Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by svlachavas ▴ 780

Dear James, thanks for the feedback and confirmation; For point 1, I was mixing different things, apologies for the not appropriate explan…

Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by James W. MacDonald 57k

1. If you use TMM, it doesn't normalize anything. It generates estimated library sizes in a way that is intended to reduce compositional b…

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C: msa compilation failure

Answer: DESeq2 Shrinkage methods for scRNA-Seq

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