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samr
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Interprentation of appropriate statistical test
samr
SAM
siggenes
bioconductor
differential gene expression
9.2 years ago
svlachavas
▴ 830
1
vote
1
reply
2.8k
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How to use SamR
samr
rnaseq
CRAN
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
aristotele_m
▴ 40
0
votes
1
reply
846
views
How to modify function of samr.estimate.depth of samr
samr
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
yuan.qing
▴ 10
1
vote
1
reply
1.1k
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samr: understanding scoring line not parallel to diagonal; reproduce example C
samr
8.7 years ago
SamGG
▴ 350
0
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2
replies
1.7k
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SAM r for finding up and down regulated genes
samr
updated 8.2 years ago by
Valerie Obenchain
★ 6.8k • written 8.2 years ago by
Linda Chaba
▴ 10
0
votes
1
reply
2.5k
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Installation of samr package on R v3.4 mac OS Sierra
samr
updated 6.9 years ago by
daniel.vantwisk
▴ 50 • written 6.9 years ago by
tommykeves
• 0
6 results • Page
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Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it always helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR? Are you starting with…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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