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samr
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Interprentation of appropriate statistical test
samr
SAM
siggenes
bioconductor
differential gene expression
9.2 years ago
svlachavas
▴ 830
1
vote
1
reply
2.8k
views
How to use SamR
samr
rnaseq
CRAN
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
aristotele_m
▴ 40
1
vote
1
reply
1.1k
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samr: understanding scoring line not parallel to diagonal; reproduce example C
samr
8.7 years ago
SamGG
▴ 350
0
votes
1
reply
848
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How to modify function of samr.estimate.depth of samr
samr
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
yuan.qing
▴ 10
0
votes
2
replies
1.7k
views
SAM r for finding up and down regulated genes
samr
updated 8.2 years ago by
Valerie Obenchain
★ 6.8k • written 8.2 years ago by
Linda Chaba
▴ 10
0
votes
1
reply
2.5k
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Installation of samr package on R v3.4 mac OS Sierra
samr
updated 6.9 years ago by
daniel.vantwisk
▴ 50 • written 6.9 years ago by
tommykeves
• 0
6 results • Page
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Answer: Why p value inconsistent when using different number of pathway score?
by
ATpoint
★ 4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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