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samr
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4
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Interprentation of appropriate statistical test
samr
SAM
siggenes
bioconductor
differential gene expression
9.2 years ago
svlachavas
▴ 830
1
vote
1
reply
2.8k
views
How to use SamR
samr
rnaseq
CRAN
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
aristotele_m
▴ 40
1
vote
1
reply
1.1k
views
samr: understanding scoring line not parallel to diagonal; reproduce example C
samr
8.7 years ago
SamGG
▴ 350
0
votes
1
reply
849
views
How to modify function of samr.estimate.depth of samr
samr
updated 8.9 years ago by
James W. MacDonald
65k • written 8.9 years ago by
yuan.qing
▴ 10
0
votes
2
replies
1.7k
views
SAM r for finding up and down regulated genes
samr
updated 8.2 years ago by
Valerie Obenchain
★ 6.8k • written 8.2 years ago by
Linda Chaba
▴ 10
0
votes
1
reply
2.5k
views
Installation of samr package on R v3.4 mac OS Sierra
samr
updated 6.9 years ago by
daniel.vantwisk
▴ 50 • written 6.9 years ago by
tommykeves
• 0
6 results • Page
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Comment: Different Shrunk Log2FC according with reference
by
Michael Love
41k
I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Votes
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
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ATpoint
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shepherl
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