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limma technical replicates and biological replicates in same design
limma
SANTA
14.6 years ago • updated 4.8 years ago
Gordon Smyth
50k
0
votes
1
reply
1.2k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
updated 4.8 years ago by
Gordon Smyth
50k • written 14.6 years ago by
Marcelo Laia
▴ 450
0
votes
0
replies
1.2k
views
FOSBE 2012
SANTA
SANTA
11.9 years ago
mabawsa
▴ 20
0
votes
5
replies
1.2k
views
Selected probes from a given probeset
Microarray
SANTA
Microarray
SANTA
12.0 years ago
Ramiro Rodríguez
▴ 30
0
votes
0
replies
1.3k
views
Bioinformatics course - October 2011 Registration is now open
Microarray
Cancer
biomaRt
ArrayExpress
genomes
SANTA
Microarray
Cancer
biomaRt
genomes
12.5 years ago
Claude Chelala
▴ 40
0
votes
0
replies
1.4k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
12.7 years ago
stefano iacus
▴ 430
0
votes
1
reply
1.2k
views
question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 13.8 years ago by
Ping Ma
▴ 10 • written 13.8 years ago by
Hervé Pagès
16k
0
votes
0
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865
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limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
14.6 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
857
views
Bioconductor Digest, Vol 79, Issue 20
Annotation
limma
SANTA
Annotation
limma
SANTA
14.6 years ago
Gordon Smyth
50k
0
votes
0
replies
801
views
OFF TOPIC high-density SSU rRNA microarray
Microarray
SANTA
Microarray
SANTA
14.6 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
922
views
[limma] Possible bug on read.maimages function ?
Annotation
limma
SANTA
Annotation
limma
SANTA
14.6 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.2k
views
help needed on avereps function
Normalization
probe
limma
SANTA
Normalization
probe
limma
SANTA
updated 14.8 years ago by
Erika Melissari
▴ 250 • written 14.8 years ago by
Francois Pepin
★ 1.3k
0
votes
0
replies
1.4k
views
limma Time Course Experiments question
graph
limma
SANTA
graph
limma
SANTA
15.1 years ago
Marcelo Laia
▴ 450
0
votes
5
replies
1.8k
views
Expressionset from ArrayExpress processed data
ArrayExpress
SANTA
ArrayExpress
SANTA
updated 15.3 years ago by
Martin Morgan
25k • written 15.3 years ago by
Yovanny Izquierdo Núñez
▴ 20
0
votes
0
replies
1.0k
views
Job: Statistical Analyst - Affymetrix, Inc.
Microarray
Genetics
Classification
SANTA
Microarray
Genetics
Classification
SANTA
19.0 years ago
Higgs, Debi
▴ 10
0
votes
4
replies
1.2k
views
Affymetrix file parsers released under LGPL open source license
SANTA
SANTA
updated 19.4 years ago by
Harry Mangalam
▴ 60 • written 19.4 years ago by
Lelivelt, Mike
▴ 50
0
votes
1
reply
1.1k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 19.5 years ago by
Francois Collin
▴ 50 • written 19.5 years ago by
Lelivelt, Mike
▴ 50
0
votes
0
replies
961
views
Affymetrix Postdoctoral Opportunity
Microarray
SANTA
Microarray
SANTA
20.4 years ago
VanLieu, Connie
▴ 10
18 results • Page
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Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
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A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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