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stuck on unimplemented type 'list' in 'EncodeElement'
list save dataframe
updated 6 weeks ago by 3.2k • written 7 weeks ago by • 0
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Large disk images of DESeqDataSet / SummarizedExperiment objects when using the save function
SummarizedExperiment DESeqDataSet GenomicRanges DESeq2 save
updated 7.5 years ago by 13k • written 7.5 years ago by ▴ 30
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Comment: I cannot install "microbiome" by shepherl 3.2k
Is there any additional output / ERROR when you try ``` BiocManager::install("GenomeInfoDbData") ```
Comment: Issue installing DEP package by shepherl 3.2k
Can you please show the command and all output when you try ``` BiocManager::install("DEP") ``` as well as the results from ``` sessionIn…
Comment: Issues installing DESeq2 package with R version 4.2.1 by ATpoint ★ 1.4k
It's perfectly compatible, but without any error message or code nobody can help you.
Comment: Detection of reference genes by Deseq2 by sj ▴ 10
Ok, I used plotMA() and it seems fine. Thanks ATpoint!
Comment: Detection of reference genes by Deseq2 by ATpoint ★ 1.4k
Long story short, use `plotMA()` to see how normalization went. If the plot is somewhat symmetric and/or the majority of point center along…
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Comment: Detection of reference genes by Deseq2
Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc
Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc
Comment: SingleCellExperiment: Edit cluster IDs in colLabels
Comment: what should be our references when 2 samples which I compare are treated and the
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