Bioconductor ScRNA

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764

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scRNAseq quickcluster scRNA scran

4 months ago ruba-mahmoud • 0

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1.0k

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scRNAseq scrna paireddesign edgeR pseudobulking

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by garcia • 0

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406

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scRNA scRNAseq

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Omer • 0

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667

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scrna scRNAseq

updated 6 months ago by Gabriella • 0 • written 13 months ago by sarah.jobbins • 0

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648

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scran Normalization scRNA BatchEffect

16 months ago r_grau ▴ 10

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2.3k

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DropletUtils emptyDrops scRNA scRNAseq 10x

21 months ago • updated 20 months ago Peter Hickey ▴ 740

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2.2k

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DESeq2 Scrna scRNAseq

2.8 years ago RDoc ▴ 10

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992

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scRNAseq scRNA batchelor BatchEffect

updated 3.4 years ago by Aaron Lun ★ 28k • written 3.4 years ago by Adrien • 0

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1.7k

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scRNA zinbwave batch IntegratedData

updated 3.6 years ago by davide risso ▴ 950 • written 3.6 years ago by Assa Yeroslaviz ★ 1.5k

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1.7k

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Seurat scRNA debugging exceptions unit-test

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by moldach ▴ 20

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4.6k

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scRNA monocle packages Tutorial

4.7 years ago 444579004 • 0

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1.5k

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scrna scrnaseq differential gene expression

updated 6.5 years ago by davide risso ▴ 950 • written 6.5 years ago by d.depledge • 0

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888

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SCRNA

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by sumetha • 0

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4.2k

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MAST scRNA GSEA

updated 6.7 years ago by Andrew_McDavid ▴ 270 • written 6.7 years ago by siajunren • 0

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1.5k

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scater scrna

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by hrishi27n ▴ 20

15 results • Page 1 of 1

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Comment: Different Shrunk Log2FC according with reference by Michael Love 41k

I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Votes

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

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