Bioconductor ScRNASeq

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120

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scRNAseq RNAseq

updated 14 days ago by ATpoint ★ 4.0k • written 16 days ago by Merav • 0

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195

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CellRanger emptyDrops scRNAseq 10X

5 weeks ago rocanja ▴ 60

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239

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scRNAseq

updated 8 weeks ago by ATpoint ★ 4.0k • written 8 weeks ago by sodiogoes • 0

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773

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scRNAseq quickcluster scRNA scran

4 months ago ruba-mahmoud • 0

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483

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scRNAseq

6 months ago Momo • 0

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378

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Rstudio scRNAseq DESeq2

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by DrFizz • 0

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835

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scRNAseq edgeR SingleCellExperiment

8 months ago duez.tolga • 0

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983

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scRNAseq RStudio DESeq2

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by DrFizz • 0

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1.0k

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scRNAseq scrna paireddesign edgeR pseudobulking

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by garcia • 0

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408

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scRNA scRNAseq

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Omer • 0

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549

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topGO scRNAseq

updated 9 months ago by Basti ▴ 780 • written 9 months ago by Francesco • 0

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343

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scRNAseq

9 months ago Jiyuan • 0

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3.4k

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scRNAseq

updated 5 months ago by Manuel • 0 • written 9 months ago by Elham • 0

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1.3k

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smart-seq2 scRNAseq scran

10 months ago Lluís Revilla Sancho ▴ 730

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466

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Workshop scRNAseq

11 months ago info ▴ 10

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667

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scrna scRNAseq

updated 6 months ago by Gabriella • 0 • written 13 months ago by sarah.jobbins • 0

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884

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SingleCell RNASeq RNASeqData scRNAseq

updated 7 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

17 results • Page 1 of 1

Recent ...

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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0