Bioconductor Scale-free topology

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methylation EPIC scale-free topology WGCNA

updated 21 months ago by shuo • 0 • written 5.1 years ago by enora.fremy • 0

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wgcna weighted correlation network analysis correlation matrix scale-free topology metagenomics

updated 5.8 years ago by Peter Langfelder ★ 3.0k • written 5.8 years ago by eneas_aguirre • 0

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wgcna picksoftthreshold scale-free topology co-expression network

6.5 years ago marcantoine.guery • 0

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WGCNA Theory Scale-Free Topology

updated 5 months ago by Garrett • 0 • written 9.5 years ago by brohawndg ▴ 150

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Comment: dmpFinder for other objects by James W. MacDonald 67k

You are better off using M-values instead of beta values because you are fitting a conventional linear regression, in which case it's bette…

Comment: dmpFinder for other objects by neyousha • 0

Thank you very much James, would you mind explaining why m-values instead of beta values? I have only beta_values available at this point.

Answer: Removing Effect of Covariate in Only a Subset of Samples in a Model Containing A by James W. MacDonald 67k

Do you end up with a column of all zeros when you include menopausal status as a factor? Also, please note that `voomLmFit` is the preferre…

Answer: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

You have a `data.frame` with 9 columns and are specifying a minimum of 20 observations per gene. Since you don't have 20 observations for a…

Comment: Annotation for EPICv2 by nurkenber • 0

Got it Thank you

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