Biostar Scanbamparam

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915

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scanBam scanbamparam

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by felix.klein ▴ 150

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1.3k

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GenomicAlignments bam scanbamparam

6.0 years ago mikko.arvas • 0

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1.1k

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genomicalignments scanbamparam

updated 7.9 years ago by James W. MacDonald 62k • written 7.9 years ago by rasi1983 ▴ 10

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686

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rsamtools isSupplementary scanbamparam scanbamflag countbam

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by galeoni • 0

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1.1k

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scanbamparam bam

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by KB ▴ 50

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1.2k

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shortread readAligned reverseComplement ScanBamParam

8.1 years ago jdavison ▴ 10

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1.1k

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rsamtools scanbamparam mapqfilter

5.6 years ago Devin King ▴ 20

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767

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rsamtools scanbamparam bam

updated 4.4 years ago by Martin Morgan 25k • written 4.4 years ago by António Miguel de Jesus Domingues ▴ 490

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1.4k

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scanbam scanbamparam rsamtools

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by Johannes Rainer ★ 2.0k

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Comment: pathview says my nonmodel species is unknown: "species invalid" by Guido Hooiveld ★ 3.5k

Does a restart of R help? Does a reinstall of the library `png` help? In a fresh R-session, what is the output from `BiocManager::valid()…

Comment: Don't let TopGo to trimm long GO names by James W. MacDonald 62k

Did you not notice that this has been answered *as part of this thread that you posted in?*

Comment: pathview says my nonmodel species is unknown: "species invalid" by nute11a • 0

Hi Luo, thank you so much for your helpful comment. While I was able to get this to work and visualize my interesting KEGG pathways (yay!) …

Comment: Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA) by Wolfgang Huber 13k

Hi Ben, your first step should be to upgrade to the current versions of R and Bioconductor. There is really little point in trouble-shooti…

Answer: Is ther an annotation package for sheep (Ovis aries) by Guido Hooiveld ★ 3.5k

Yes, there is! An `EnsDb` for sheep can be obtained through the so-called `AnnotationHub`. See James' and my posts in the thread linked t…

Votes

FDR and padj in deseq and edger

Comment: Mutect version, matched normal and manual curation in PureCN

Answer: Is ther an annotation package for sheep (Ovis aries)

Is ther an annotation package for sheep (Ovis aries)

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Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k