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sce
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reset
2
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5
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Merging multiple single cell experiment objects from different samples
sce
SingleCellExperiment
merge
updated 13 months ago by
mollyab12
• 0 • written 24 months ago by
achoppe
▴ 10
1
vote
2
replies
1.8k
views
ident function in sce
SingleCellExperiment
cluster
identities
sce
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
reinepapillon
• 0
0
votes
1
reply
1.2k
views
Clearer error messages in SingleCellExperiment cbind
singlecellexperiment
sce
scater
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
bharris
• 0
2
votes
4
replies
2.3k
views
Quality control in SingleCellExperiment
SingleCellExperiment
scater
sce
quality control
updated 3.2 years ago by
1498554536
• 0 • written 4.1 years ago by
Linda
• 0
3
votes
3
replies
1.4k
views
Different number of marker genes between same clusters
sce
markers
single cell
DE
clusters
4.6 years ago
ludmi.b
• 0
4
votes
7
replies
4.4k
views
removing rows from SingleCellExperiment container
sce
singlecellexperiment
scRNAseq
subsetting
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
TJ
• 0
1
vote
2
replies
871
views
Inserting "Biotype" into scater SCE objects
scater
sce
biotype
R
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
thebadpenny
• 0
0
votes
2
replies
1.0k
views
How to process ids containing "." in BiomaRt?
sce
biomart
annotation
updated 6.8 years ago by
Mike Smith
★ 6.5k • written 6.8 years ago by
linda.c.dansereau
• 0
8 results • Page
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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