Showing : scrna • reset
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13
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Running the DESeq2 "DESeqDataSetFromMatrix" function returns a dimname error
DESeq2 Scrna scRNAseq
10 months ago RDoc ▴ 10
1
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1
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407
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Combining treatment and control batches for analysis
scRNAseq scRNA batchelor BatchEffect
updated 18 months ago by ★ 27k • written 18 months ago by • 0
1
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4
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519
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How to work with duplicates calculating the differentially expressed genes in PseudoBulk-singleCell RNA experiment using zinbwave?
scRNA zinbwave batch IntegratedData
updated 20 months ago by ▴ 890 • written 20 months ago by ★ 1.5k
0
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3
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Error: no applicable method for `RunTSNE` applied to an object of class "try-error"
Seurat scRNA debugging exceptions unit-test
updated 2.5 years ago by 25k • written 2.5 years ago by ▴ 20
0
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1
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1.7k
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monocle error at orderCells
scRNA monocle packages Tutorial
2.7 years ago 444579004 • 0
1
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3
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Differential Expression analysis between distinct scRNA-seq datasets
scrna scrnaseq differential gene expression
updated 4.5 years ago by ▴ 890 • written 4.5 years ago by • 0
0
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1
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520
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DeSeq2 , Differntial expression
SCRNA
updated 4.6 years ago by ★ 27k • written 4.6 years ago by • 0
2
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1
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2.6k
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Intepretation of Z scores for gene set enrichment analysis in MAST
MAST scRNA GSEA
updated 4.8 years ago by ▴ 260 • written 4.8 years ago by • 0
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2
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1.1k
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sc-RNA data analysis using scater
scater scrna
updated 5.3 years ago by ★ 27k • written 5.3 years ago by ▴ 20
9 results • Page 1 of 1
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Comment: featureCounts: 0% successfully assigned fragments by KMS • 0
Dear ATpoint I am exactly looking for read/gene count from BAM/SAM file either through ht-seq or feature count feature count giving me 0% s…
Answer: Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene by James W. MacDonald 59k
There is the ncbiRefSeqSelect table that has the MANE and RefSeq Select transcripts. It's not just the MANE though. ``` > z <- makeTxDb…
Comment: Handling of missing values in limma by AyHi • 0
Thank you, Gordon, for your reply. I used sum(is.na(lmfit)) after lmFit, but somewhat it indicated there was no NA observations even when…
Comment: merging VCF files by lesefo6448 • 0
You can use this VCF Merger Software if you want to Merge VCF files into one file. this Software easily Merge your multiple VCF files with…
Comment: featureCounts: 0% successfully assigned fragments by ATpoint ★ 1.2k
What you have to do is to check whether the chromosome names in the BAM file are part of the GTF. Do it programatically, not by eye. Extrac…
Votes
Answer: Load packages when using BatchtoolsParam
Comment: Load packages when using BatchtoolsParam
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
A: DESeq2: thousands of NA for pvalues?
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