Biostar Scrna

Showing : scrna • reset

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DESeq2 Scrna scRNAseq

10 months ago RDoc ▴ 10

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540

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scRNA zinbwave batch IntegratedData

updated 20 months ago by davide risso ▴ 890 • written 20 months ago by Assa Yeroslaviz ★ 1.5k

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806

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Seurat scRNA debugging exceptions unit-test

updated 2.6 years ago by Martin Morgan 25k • written 2.6 years ago by moldach ▴ 20

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751

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scrna scrnaseq differential gene expression

updated 4.6 years ago by davide risso ▴ 890 • written 4.6 years ago by d.depledge • 0

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1.1k

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scater scrna

updated 5.3 years ago by Aaron Lun ★ 27k • written 5.3 years ago by hrishi27n ▴ 20

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1.7k

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scRNA monocle packages Tutorial

2.7 years ago 444579004 • 0

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523

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SCRNA

updated 4.6 years ago by Aaron Lun ★ 27k • written 4.6 years ago by sumetha • 0

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415

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scRNAseq scRNA batchelor BatchEffect

updated 18 months ago by Aaron Lun ★ 27k • written 18 months ago by Adrien • 0

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2.6k

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MAST scRNA GSEA

updated 4.8 years ago by Andrew_McDavid ▴ 260 • written 4.8 years ago by siajunren • 0

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Comment: Rsamtools is not available for (for R version 4.0.2) by olinares-perdomo • 0

I had the same problem (R 4.2.0) I used BiocManager::install("Rsamtools", force = TRUE) And it is working fine

Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Gordon Smyth 45k

When I answered your original question, I assumed you would use the simplest possible code ``` Status <- factor(Sample_info$Status) ``` w…

Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Mohamed • 0

Thanks a lot, will try this and see.

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a by Steve Lianoglou 13k

> My question is why the design matrix named its last column ' StatusControl' and not 'statustreated' ? It's because the Intercept is th…

Comment: Italicise by Kevin Blighe 3.5k

Hi, can you compare the contents of your variable, `lab_italics` , versus those of the variable (`selectLab_italics`) that is produced in m…

Votes

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.

DESeq2: likelihood ratio test interpretation, multifactor

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Teacher to Michael Love 37k