Bioconductor Scrna

Showing : scrna • reset

votes

replies

2.2k

views

DropletUtils emptyDrops scRNA scRNAseq 10x

20 months ago Peter Hickey ▴ 740

votes

4.2k

views

MAST scRNA GSEA

updated 6.7 years ago by Andrew_McDavid ▴ 270 • written 6.7 years ago by siajunren • 0

votes

887

views

SCRNA

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by sumetha • 0

vote

replies

1.5k

views

scrna scrnaseq differential gene expression

updated 6.5 years ago by davide risso ▴ 950 • written 6.5 years ago by d.depledge • 0

votes

replies

1.7k

views

Seurat scRNA debugging exceptions unit-test

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by moldach ▴ 20

vote

replies

1.7k

views

scRNA zinbwave batch IntegratedData

updated 3.6 years ago by davide risso ▴ 950 • written 3.6 years ago by Assa Yeroslaviz ★ 1.5k

vote

984

views

scRNAseq scRNA batchelor BatchEffect

updated 3.4 years ago by Aaron Lun ★ 28k • written 3.4 years ago by Adrien • 0

votes

replies

1.0k

views

scRNAseq scrna paireddesign edgeR pseudobulking

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by garcia • 0

votes

402

views

scRNA scRNAseq

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Omer • 0

vote

replies

1.5k

views

scater scrna

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by hrishi27n ▴ 20

votes

replies

2.2k

views

DESeq2 Scrna scRNAseq

2.7 years ago RDoc ▴ 10

vote

replies

740

views

scRNAseq quickcluster scRNA scran

4 months ago ruba-mahmoud • 0

votes

replies

661

views

scrna scRNAseq

updated 5 months ago by Gabriella • 0 • written 13 months ago by sarah.jobbins • 0

votes

4.6k

views

scRNA monocle packages Tutorial

4.6 years ago 444579004 • 0

vote

replies

636

views

scran Normalization scRNA BatchEffect

15 months ago r_grau ▴ 10

15 results • Page 1 of 1

Recent ...

Replies

Comment: Finding DEGs by using edgeR by Gordon Smyth 50k

Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …

Comment: How to make DGEList and design matrix by edgeR package by prity6459 • 0

Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…

Comment: Finding DEGs by using edgeR by prity6459 • 0

Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …

Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k

It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…

Answer: How to make DGEList and design matrix by edgeR package by Gordon Smyth 50k

Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…

Votes

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Awards • All