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scrnaseq
•
reset
0
votes
2
replies
138
views
Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
10 days ago • updated 9 days ago
rocanja
▴ 60
0
votes
1
reply
216
views
How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
scRNAseq
updated 4 weeks ago by
ATpoint
★ 4.0k • written 4 weeks ago by
sodiogoes
• 0
1
vote
2
replies
632
views
ScRNAseq analysis scran :: quickcluster Error
scRNAseq
quickcluster
scRNA
scran
3 months ago
ruba-mahmoud
• 0
0
votes
2
replies
435
views
scRNA analysis : DEG between low and high-expressing cells
scRNAseq
5 months ago
Momo
• 0
0
votes
1
reply
349
views
FALSE error when checking a pre made sample data
Rstudio
scRNAseq
DESeq2
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
DrFizz
• 0
1
vote
5
replies
768
views
Recommendation for large.n in filterByExpr
scRNAseq
edgeR
SingleCellExperiment
7 months ago
duez.tolga
• 0
0
votes
1
reply
906
views
DESeq2 error after installing BiocManager
scRNAseq
RStudio
DESeq2
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
DrFizz
• 0
4
votes
3
replies
983
views
Custom design for scRNA DGE with pseudobulking
scRNAseq
scrna
paireddesign
edgeR
pseudobulking
updated 7 months ago by
Gordon Smyth
50k • written 8 months ago by
garcia
• 0
0
votes
1
reply
369
views
If highly-expressed genes are upregulated, what happens to genes with lower expression after normalization?
scRNA
scRNAseq
updated 8 months ago by
ATpoint
★ 4.0k • written 8 months ago by
Omer
• 0
0
votes
1
reply
520
views
library(topGO) query
topGO
scRNAseq
updated 8 months ago by
Basti
▴ 750 • written 8 months ago by
Francesco
• 0
0
votes
0
replies
315
views
adding noise to scRNA Seq counts
scRNAseq
8 months ago
Jiyuan
• 0
1
vote
11
replies
3.0k
views
Error: Bioconductor version cannot be validated; no internet connection?
scRNAseq
updated 4 months ago by
Manuel
• 0 • written 9 months ago by
Elham
• 0
2
votes
3
replies
1.2k
views
P-value histogram of testLinearModel is not uniform
smart-seq2
scRNAseq
scran
9 months ago
Lluís Revilla Sancho
▴ 730
0
votes
0
replies
439
views
News:
course - single-cell RNAseq data analysis with R and Bioconductor
Workshop
scRNAseq
10 months ago
info
▴ 10
0
votes
1
reply
531
views
scRNAseq Download Errors
scRNAseq
updated 11 months ago by
shepherl
3.8k • written 11 months ago by
Dario Strbenac
★ 1.5k
2
votes
0
replies
1.0k
views
How to aggregate pseudobulks: Normalization & Log-Transformation
pseudobulk
scRNAseq
GSVA
11 months ago
Tadeoye
▴ 20
0
votes
2
replies
636
views
Could not find function "Standard Chromosomes"
scrna
scRNAseq
updated 5 months ago by
Gabriella
• 0 • written 12 months ago by
sarah.jobbins
• 0
17 results • Page
1 of 1
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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