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scrnaseq
•
reset
0
votes
2
replies
135
views
Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
9 days ago • updated 8 days ago
rocanja
▴ 60
0
votes
1
reply
214
views
How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
scRNAseq
updated 4 weeks ago by
ATpoint
★ 4.0k • written 4 weeks ago by
sodiogoes
• 0
1
vote
2
replies
627
views
ScRNAseq analysis scran :: quickcluster Error
scRNAseq
quickcluster
scRNA
scran
3 months ago
ruba-mahmoud
• 0
0
votes
2
replies
433
views
scRNA analysis : DEG between low and high-expressing cells
scRNAseq
5 months ago
Momo
• 0
0
votes
1
reply
348
views
FALSE error when checking a pre made sample data
Rstudio
scRNAseq
DESeq2
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
DrFizz
• 0
1
vote
5
replies
767
views
Recommendation for large.n in filterByExpr
scRNAseq
edgeR
SingleCellExperiment
7 months ago
duez.tolga
• 0
0
votes
1
reply
902
views
DESeq2 error after installing BiocManager
scRNAseq
RStudio
DESeq2
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
DrFizz
• 0
4
votes
3
replies
982
views
Custom design for scRNA DGE with pseudobulking
scRNAseq
scrna
paireddesign
edgeR
pseudobulking
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
garcia
• 0
0
votes
1
reply
368
views
If highly-expressed genes are upregulated, what happens to genes with lower expression after normalization?
scRNA
scRNAseq
updated 8 months ago by
ATpoint
★ 4.0k • written 8 months ago by
Omer
• 0
0
votes
1
reply
518
views
library(topGO) query
topGO
scRNAseq
updated 8 months ago by
Basti
▴ 750 • written 8 months ago by
Francesco
• 0
0
votes
0
replies
314
views
adding noise to scRNA Seq counts
scRNAseq
8 months ago
Jiyuan
• 0
1
vote
11
replies
3.0k
views
Error: Bioconductor version cannot be validated; no internet connection?
scRNAseq
updated 4 months ago by
Manuel
• 0 • written 9 months ago by
Elham
• 0
2
votes
3
replies
1.2k
views
P-value histogram of testLinearModel is not uniform
smart-seq2
scRNAseq
scran
9 months ago
Lluís Revilla Sancho
▴ 730
0
votes
0
replies
436
views
News:
course - single-cell RNAseq data analysis with R and Bioconductor
Workshop
scRNAseq
10 months ago
info
▴ 10
0
votes
1
reply
529
views
scRNAseq Download Errors
scRNAseq
updated 11 months ago by
shepherl
3.8k • written 11 months ago by
Dario Strbenac
★ 1.5k
2
votes
0
replies
1.0k
views
How to aggregate pseudobulks: Normalization & Log-Transformation
pseudobulk
scRNAseq
GSVA
11 months ago
Tadeoye
▴ 20
0
votes
2
replies
632
views
Could not find function "Standard Chromosomes"
scrna
scRNAseq
updated 5 months ago by
Gabriella
• 0 • written 12 months ago by
sarah.jobbins
• 0
17 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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