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scuttle

updated 4 days ago by Aaron Lun ★ 28k • written 6 days ago by Adam ▴ 10

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scran bluster scater scuttle

updated 8 months ago by ATpoint ★ 4.6k • written 8 months ago by Dario Strbenac ★ 1.5k

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scuttle scater

updated 15 months ago by ATpoint ★ 4.6k • written 15 months ago by Abbi Edwards • 0

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scuttle scater seurat SpatialExperiment

22 months ago cathalgking ▴ 10

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scuttle scater SpatialExperiment

updated 22 months ago by alan.ocallaghan ▴ 160 • written 23 months ago by cathalgking ▴ 10

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

2.8 years ago behr201 • 0

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scater SingleCellExperiment BiocParallel scuttle scran

3.1 years ago enricoferrero ▴ 660

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scran SingleCellExperiment scuttle scater

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by enricoferrero ▴ 660

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scran scater scuttle

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by enricoferrero ▴ 660

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Answer: Can we get beta values with DMRcate package by James W. MacDonald 67k

If you get an error that says ``` Error in getCollapsedBetas(myAnnotation) : could not find function "getCollapsedBetas" ``` It …

Comment: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.6k

I think this already happened, see https://github.com/nf-core/rnasplice/issues/162

Comment: What type of counts data to import for performing Isoform analysis in edgeR by Phil ▴ 10

All nf-core pipelines can be run with any additional tool CLI flags, on a per-user basis without editing any pipeline code. See docs on how…

Comment: Running multiple KNN queries in parallel by SamGG ▴ 360

Thank you for your detailed answer, I appreciate it and your work.

Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k

That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …

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Answer: RSubread output significantly different from bash Subread output

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: Running multiple KNN queries in parallel

Answer: RSubread output significantly different from bash Subread output

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