Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
scuttle
•
reset
0
votes
1
reply
25
views
scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
scuttle
updated 4 hours ago by
Aaron Lun
★ 28k • written 12 hours ago by
Adam
• 0
2
votes
1
reply
534
views
Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran
bluster
scater
scuttle
updated 8 months ago by
ATpoint
★ 4.6k • written 8 months ago by
Dario Strbenac
★ 1.5k
0
votes
3
replies
1.6k
views
Is logNormCounts log2 normalised counts as default?
scuttle
scater
updated 15 months ago by
ATpoint
★ 4.6k • written 15 months ago by
Abbi Edwards
• 0
1
vote
0
replies
1.9k
views
Convert SpatialExperiment Object to Seurat Object
scuttle
scater
seurat
SpatialExperiment
22 months ago
cathalgking
▴ 10
0
votes
1
reply
938
views
cell_count column in SpatialExperiment Object
scuttle
scater
SpatialExperiment
updated 22 months ago by
alan.ocallaghan
▴ 160 • written 23 months ago by
cathalgking
▴ 10
2
votes
2
replies
1.6k
views
scuttle:: librarySizeFactors returning non-finite values
normalizeCounts
scran
librarySizeFactors
scuttle
scRNAseq
2.8 years ago
behr201
• 0
3
votes
3
replies
2.0k
views
Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
scater
SingleCellExperiment
BiocParallel
scuttle
scran
3.1 years ago
enricoferrero
▴ 660
4
votes
5
replies
2.9k
views
scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
scran
SingleCellExperiment
scuttle
scater
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
enricoferrero
▴ 660
5
votes
4
replies
7.0k
views
scRNA-seq pseudo-bulk differential expression analysis with pseudobulkDGE()
scran
scater
scuttle
updated 4.3 years ago by
Aaron Lun
★ 28k • written 4.3 years ago by
enricoferrero
▴ 660
9 results • Page
1 of 1
Recent ...
Replies
Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable
by
Gordon Smyth
52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
• 0
> dim(spe) [1] 19962 425
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Awards
• All
Popular Question
to
mikat
• 0
Popular Question
to
joseph.joonsang
• 0
Popular Question
to
Hans-Ulrich Klein
▴ 330
Popular Question
to
shepherl
4.1k
Popular Question
to
Hervé Pagès
16k
Locations
• All
France,
19 minutes ago
Germany,
22 minutes ago
Ireland,
23 minutes ago
United Kingdom,
44 minutes ago
Denmark,
1 hour ago
Traffic: 746 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6