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scuttle scater seurat SpatialExperiment

4 months ago cathalgking ▴ 10

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scuttle scater SpatialExperiment

updated 4 months ago by alan.ocallaghan ▴ 120 • written 4 months ago by cathalgking ▴ 10

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

15 months ago behr201 • 0

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scater SingleCellExperiment BiocParallel scuttle scran

19 months ago enricoferrero ▴ 660

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scran SingleCellExperiment scuttle scater

updated 2.4 years ago by Aaron Lun ★ 28k • written 2.4 years ago by enricoferrero ▴ 660

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scran scater scuttle

updated 2.8 years ago by Aaron Lun ★ 28k • written 2.8 years ago by enricoferrero ▴ 660

6 results • Page 1 of 1

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Comment: Interpret plot from DiffBind by Chris • 0

I sorted Fold decreasing. When I filter out genes with fold > 2.5 and filter out genes with fold < -2.5 and got 1287 genes appear in both s…

Comment: Interpret plot from DiffBind by Chris • 0

Thank you so much. I think the function is `dba.report()`. more_open_in_disease: 79113 more_closed_in_disease: 36828 So there are 79113 pea…

Comment: Interpret plot from DiffBind by Chris • 0

Hi Rory, when I run your code, I got this error: Error: unexpected ')' in: " matrices_color=list(c("white", "ma…

Comment: Can DESeq2 handle huge variations in sequencing depth among samples? by Gopinath • 0

Thanks for your suggestion, Michael. I will try that strategy.

Comment: Error with IsoformSwitchAnalyzer: analyzePFAM by Callum • 0

It seems that the problem doesn't occur when the input file is significantly shortened to ~20 transcripts! Please help

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A: ggbio error: Objects of type OrganismDb not supported by autoplot

Answer: DeSEQ 2 Error: some values in assay are negative

DESeq2 Error from Installing a Package

Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Comment: Error: biomaRt has encountered an unexpected server error.

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