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scuttle scater seurat SpatialExperiment

6 weeks ago cathalgking ▴ 10

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scuttle scater SpatialExperiment

updated 7 weeks ago by alan.ocallaghan ▴ 120 • written 9 weeks ago by cathalgking ▴ 10

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

13 months ago behr201 • 0

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scater SingleCellExperiment BiocParallel scuttle scran

17 months ago • updated 16 months ago enricoferrero ▴ 660

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scran SingleCellExperiment scuttle scater

updated 2.2 years ago by Aaron Lun ★ 28k • written 2.2 years ago by enricoferrero ▴ 660

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scran scater scuttle

updated 2.6 years ago by Aaron Lun ★ 28k • written 2.6 years ago by enricoferrero ▴ 660

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Answer: MSA package fails to be installed - installation of package ‘msa’ had non-zero by stitam • 0

Hi, I came across the same issue when trying to install `msa` in a docker (singularity) container. My base image was `debian:bullseye-20230…

Comment: deseq2 nested multifactorial analysis by Basti ▴ 700

The information on genotype is included in the condition : all Control_1 are A, all Control_2 are B The condition variable is sufficient to…

Comment: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R by Yang Shi ▴ 10

Thanks for your reply sir!

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by Rory Stark ★ 4.6k

`dba.count()` counts reads overlapping consensus regions. After that, the original peak scores are ignored. All quantitative analysis (via …

Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

I'd like to test: 1. Are there differences between treatment (cold vs regrowth) time profiles for each line? 2. Do lines react differentl…

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Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

A: Pathway analysis of differentially methylated CpGs

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

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Popular Question to Robert Castelo ★ 3.0k