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scran scater scuttle

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.4 years ago by enricoferrero ▴ 660

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scran SingleCellExperiment scuttle scater

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by enricoferrero ▴ 660

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scater SingleCellExperiment BiocParallel scuttle scran

3.2 years ago enricoferrero ▴ 660

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scuttle

updated 5 weeks ago by Aaron Lun ★ 28k • written 6 weeks ago by Adam ▴ 10

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

2.9 years ago behr201 • 0

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scran bluster scater scuttle

updated 9 months ago by ATpoint ★ 4.6k • written 9 months ago by Dario Strbenac ★ 1.5k

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scuttle scater seurat SpatialExperiment

23 months ago cathalgking ▴ 10

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scuttle scater SpatialExperiment

updated 23 months ago by alan.ocallaghan ▴ 160 • written 2.0 years ago by cathalgking ▴ 10

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scuttle scater

updated 16 months ago by ATpoint ★ 4.6k • written 16 months ago by Abbi Edwards • 0

9 results • Page 1 of 1

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Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Michael Love 43k

hi, for questions about what statistical analysis approach to use, I recommend you work with a local statistician or someone familiar with …

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

I'm not certain that this will work with Oarfish, the documentation only mentions Salmon and piscem. I'd use tximport for now.

Answer: Problems with oarfish + tximport + swish by Michael Love 43k

> This is fine Did tximeta() print that a matching transcriptome was found?

Answer: DESeq2 Heatmap by swbarnes2 ★ 1.4k

> However, I've been asked why the first column (vehicle/control) isn't > entirely zero on the log fold change (logFC) expression scale. …

Comment: Biomart and ensembl not working? by James W. MacDonald 67k

``` > library(biomaRt) > mart <- useEnsembl("ensembl","hsapiens_gene_ensembl") Ensembl site unresponsive, trying useast mirror > mart Objec…

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Answer: Limma Interaction Effect with Covariates

Comment: DESeq2 for single cell pseudobulk processing

C: Limma: how to get same output as topTable but for all the genes ?

A: Processing agilent data by limma

A: Linear regression in DESeq2

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Commentator to Michael Love 43k