Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
seqArray
•
reset
2
votes
8
replies
1.9k
views
SeqArray_1.19.2, SeqArray::info() for example gds data does not return correct character list for `AA` column
SeqArray
info
SeqArray::info()
6.3 years ago
qliu7
• 0
0
votes
2
replies
1.3k
views
Seq Array converting VCF to GDS using seqVCF2GDS, unable to find file problems with vcf.fn
seqarray
updated 5.7 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.7 years ago by
cav3gh
• 0
4
votes
2
replies
1.8k
views
Imputed dosages in GENESIS
genesis
gwastools
seqarray
5.5 years ago • updated 5.2 years ago
Stephanie M. Gogarten
▴ 870
1
vote
3
replies
1.2k
views
seqVCF2GDS Error Converting VCF to GDS file
software error
SeqArray
seqVCF2GDS
updated 4.7 years ago by
zhengx
▴ 30 • written 4.7 years ago by
winstondunnmd
▴ 10
0
votes
2
replies
928
views
SeqArray problem in seqVCF2GDS and convert back to vcf
SeqArray
updated 5.1 years ago by
zhengx
▴ 30 • written 5.1 years ago by
miyouduniu
• 0
1
vote
1
reply
1.4k
views
How to imports DS field from VCF files with SeqArray seqVCF2GDS()
seqArray
seqVCF2GDS
updated 3.9 years ago by
Stephanie M. Gogarten
▴ 870 • written 3.9 years ago by
ealopera
• 0
6 results • Page
1 of 1
Recent ...
Replies
Comment: Finding DEGs by using edgeR
by
Gordon Smyth
50k
Filtering (removing lowly expressed genes) has nothing to do with normalization. It isn't clear why not subsetting would cause any difficu…
Comment: How to make DGEList and design matrix by edgeR package
by
prity6459
• 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR
by
prity6459
• 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Awards
• All
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Popular Question
to
W. Evan Johnson
▴ 850
Popular Question
to
Alejandro Reyes
★ 1.9k
Locations
• All
WEHI, Melbourne, Australia,
just now
France,
1 minute ago
Switzerland,
5 minutes ago
Germany,
13 minutes ago
Germany,
15 minutes ago
Traffic: 864 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6