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seqArray
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SeqArray_1.19.2, SeqArray::info() for example gds data does not return correct character list for `AA` column
SeqArray
info
SeqArray::info()
6.3 years ago
qliu7
• 0
4
votes
2
replies
1.8k
views
Imputed dosages in GENESIS
genesis
gwastools
seqarray
5.5 years ago • updated 5.2 years ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
1.4k
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How to imports DS field from VCF files with SeqArray seqVCF2GDS()
seqArray
seqVCF2GDS
updated 3.9 years ago by
Stephanie M. Gogarten
▴ 870 • written 3.9 years ago by
ealopera
• 0
0
votes
2
replies
1.3k
views
Seq Array converting VCF to GDS using seqVCF2GDS, unable to find file problems with vcf.fn
seqarray
updated 5.7 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.7 years ago by
cav3gh
• 0
1
vote
3
replies
1.2k
views
seqVCF2GDS Error Converting VCF to GDS file
software error
SeqArray
seqVCF2GDS
updated 4.7 years ago by
zhengx
▴ 30 • written 4.7 years ago by
winstondunnmd
▴ 10
0
votes
2
replies
934
views
SeqArray problem in seqVCF2GDS and convert back to vcf
SeqArray
updated 5.1 years ago by
zhengx
▴ 30 • written 5.2 years ago by
miyouduniu
• 0
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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