Biostar Seqarray

Showing : seqarray • reset

vote

751

views

seqArray seqVCF2GDS

updated 2.7 years ago by Stephanie M. Gogarten ▴ 820 • written 2.7 years ago by ealopera • 0

vote

replies

592

views

software error SeqArray seqVCF2GDS

updated 3.5 years ago by zhengx ▴ 30 • written 3.5 years ago by winstondunnmd • 0

votes

replies

609

views

SeqArray

updated 3.9 years ago by zhengx ▴ 30 • written 3.9 years ago by miyouduniu • 0

votes

replies

1.1k

views

genesis gwastools seqarray

4.3 years ago • updated 4.0 years ago Stephanie M. Gogarten ▴ 820

votes

replies

824

views

seqarray

updated 4.5 years ago by Stephanie M. Gogarten ▴ 820 • written 4.5 years ago by cav3gh • 0

votes

replies

1.2k

views

SeqArray info SeqArray::info()

5.1 years ago qliu7 • 0

6 results • Page 1 of 1

Recent ...

Replies

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thanks for all answers. I have tried, but still get an error message. Do you know how I can work around this? > library(pd.mir…

Answer: struggling to create a heatmap by ATpoint ★ 2.1k

I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…

Answer: collapseReplicates error after tximeta by Michael Love 39k

The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…

Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it by ATpoint ★ 2.1k

That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…

Answer: Which genes are outliers in DESeq2? by ATpoint ★ 2.1k

You can take over some of the lines from `results()` to find them easily: ```r suppressPackageStartupMessages(library(DESeq2)) set.s…

Votes

Significant reporter activity with mpralm function

Answer: I cannot install annotables package in Rstudio (macOS)

Answer: log2 of normalized counts for further analyzes

Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it

Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used

Awards • All

Commentator to Lucia ▴ 40