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seqgsea
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913
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Including sva results in SeqGSEA with data with batch effect
limma
deseq2
seqgsea
sva
deseq
4.7 years ago
kentfung
▴ 20
0
votes
1
reply
935
views
install SeqGSEA problem
seqgsea
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
jial2
• 0
0
votes
1
reply
1.1k
views
accounting for gene length with SeqGSEA
goseq
SeqGSEA
goseq
SeqGSEA
updated 8.4 years ago by
Xi Wang
• 0 • written 10.8 years ago by
Julie Leonard
▴ 110
0
votes
3
replies
1.8k
views
Running the GSEA algorithm
Microarray
GeneSetEnrichment
PGSEA
GSEABase
GSRI
SeqGSEA
Microarray
GeneSetEnrichment
GSRI
updated 10.0 years ago by
Steve Lianoglou
★ 13k • written 10.0 years ago by
Leif Väremo
▴ 70
0
votes
5
replies
3.3k
views
Running the GSEA algorithm
Infrastructure
PGSEA
GSEABase
SeqGSEA
Infrastructure
PGSEA
GSEABase
SeqGSEA
updated 10.0 years ago by
Julian Gehring
★ 1.3k • written 10.0 years ago by
enricoferrero
▴ 660
5 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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