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seqinr
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Seqinr for FASTQ files?
fastq
fast
seqinr
updated 2.0 years ago by
ATpoint
★ 4.0k • written 2.0 years ago by
hank00000
• 0
0
votes
0
replies
1.1k
views
Match peptide within protein sequence fasta and extract position information based on protein sequence
R
seqinr
biostrings
5.6 years ago
rabalski
• 0
0
votes
1
reply
736
views
SeqinR socketConnection error help?
seqinr
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
daviqd.halvorsen
• 0
0
votes
0
replies
954
views
Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql
fastq
seqinr
ngs
sangerseqr
6.0 years ago
JoeMG
• 0
2
votes
1
reply
4.5k
views
Reading fasta file with multiple sequences
multiple sequences
bioconductor
rstudio
seqinr
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
Riot
• 0
1
vote
1
reply
1.2k
views
Given a multifasta file and for each sequence, shuffle middle part of the sequence leaving the flanks intact and the opposite
shuffle
regioner
seqinr
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
Dimitris Polychronopoulos
▴ 80
1
vote
7
replies
3.2k
views
seqinr package - choosebank() function not connecting
seqinr
choose bank
error message
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
jayanthisahithi
▴ 10
4
votes
3
replies
3.7k
views
a package for read.fasta
seqinr
fasta
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
Angel
▴ 40
8 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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