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seqinr
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Seqinr for FASTQ files?
fastq
fast
seqinr
updated 24 months ago by
ATpoint
★ 4.0k • written 24 months ago by
hank00000
• 0
0
votes
0
replies
1.1k
views
Match peptide within protein sequence fasta and extract position information based on protein sequence
R
seqinr
biostrings
5.6 years ago
rabalski
• 0
0
votes
1
reply
718
views
SeqinR socketConnection error help?
seqinr
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
daviqd.halvorsen
• 0
0
votes
0
replies
937
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Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql
fastq
seqinr
ngs
sangerseqr
5.9 years ago
JoeMG
• 0
2
votes
1
reply
4.5k
views
Reading fasta file with multiple sequences
multiple sequences
bioconductor
rstudio
seqinr
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
Riot
• 0
1
vote
1
reply
1.2k
views
Given a multifasta file and for each sequence, shuffle middle part of the sequence leaving the flanks intact and the opposite
shuffle
regioner
seqinr
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
Dimitris Polychronopoulos
▴ 80
1
vote
7
replies
3.1k
views
seqinr package - choosebank() function not connecting
seqinr
choose bank
error message
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
jayanthisahithi
▴ 10
4
votes
3
replies
3.7k
views
a package for read.fasta
seqinr
fasta
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
Angel
▴ 40
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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