Bioconductor Seqinr

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952

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fastq fast seqinr

updated 2.0 years ago by ATpoint ★ 4.0k • written 2.0 years ago by hank00000 • 0

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1.1k

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R seqinr biostrings

5.6 years ago rabalski • 0

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735

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seqinr

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by daviqd.halvorsen • 0

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954

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rmysql fastq seqinr ngs sangerseqr

6.0 years ago JoeMG • 0

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4.5k

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multiple sequences bioconductor rstudio seqinr

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by Riot • 0

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1.2k

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shuffle regioner seqinr

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by Dimitris Polychronopoulos ▴ 80

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3.2k

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seqinr choose bank error message

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by jayanthisahithi ▴ 10

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3.7k

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seqinr fasta

updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by Angel ▴ 40

8 results • Page 1 of 1

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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by marka • 0

As a single dad in Australia, finding time to unwind is rare, but [Lincoln Casino][1] has become my go-to escape after putting the kids to …

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Votes

Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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