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seqlevels
•
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0
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4
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1.3k
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threeUTRsByTranscript appears to not work after invoking setter seqlevelsStyle
txdb
threeutrsbytranscript
seqlevelsstyle
seqlevels
8.6 years ago
Robert K. Bradley
▴ 40
2
votes
3
replies
7.6k
views
GRanges - changing seqlevels
granges
seqlevels
9.0 years ago
Hermann Norpois
▴ 170
2
votes
3
replies
1.4k
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene
seqlevels
bugs
updated 7.3 years ago by
Hervé Pagès
16k • written 7.4 years ago by
wcstcyx
▴ 30
2
votes
2
replies
2.3k
views
Feature request: syntax for dropping unused seqlevels in GRanges objects
granges
seqlevels
feature request
updated 23 months ago by
story.benjamin
▴ 20 • written 6.9 years ago by
Charles Plessy
▴ 180
2
votes
1
reply
1.8k
views
'seqlevels(seqinfo(x))' and 'levels(seqnames(x))' are not identical
variantannotation
seqlevels
error
updated 9.6 years ago by
Valerie Obenchain
★ 6.8k • written 9.6 years ago by
Asma rabe
▴ 290
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
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by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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