Biostar Sequencing

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Sequencing edgeR

12.1 years ago • updated 9 weeks ago Gordon Smyth 46k

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780

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Sequencing edgeR Sequencing edgeR

updated 9 weeks ago by Gordon Smyth 46k • written 12.2 years ago by Naomi Altman ★ 6.0k

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Sequencing sequencingDeepth BatchEffect DESeq2

9 months ago ary.lech ▴ 10

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Sequencing bioinformatics

9 months ago chao.xing • 0

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217

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bioinformatics genomics proteomics biologicalchemistry sequencing

6 months ago Robert Castelo ★ 2.9k

5 results • Page 1 of 1

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Answer: mapToAlignments_issue by Hervé Pagès 15k

> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…

Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution by James W. MacDonald 60k

Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?

Comment: OPLS-DA: confidence interval for accuracy metric by Eddie • 0

Worked well under pROC. Thank you

Comment: errors in annotation by James W. MacDonald 60k

If you go to NCBI and the data appear to be correct, then they have evidently already fixed the errors you have found. The data we download…

Comment: How should I set my eps value in cluster profiler? by Guido Hooiveld ★ 3.3k

Under the hood `clusterProfiler` makes use of a (fast) GSEA algorithm implemented in the package `fgsea` (function `fgseaMultilevel`). The …

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Answer: mapToAlignments_issue

Analysis of peaks generated from Homer using Diffbind

How to select summit size for histone ChiP-Seq in Diffbind

Comment: GSEA with Wikipathways not entirely reproducible

Comment: How to get gene length for RPKM directly from DGEList object in latest edgeR?

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