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sesame
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2
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5
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Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame
IlluminaHumanMethylationEPICv2anno.20a1.hg38
methylationEPICv2.0
EpicV2
updated 4 weeks ago by
aldea85
• 0 • written 5 months ago by
Courtney
• 0
0
votes
3
replies
647
views
sesameDataCache is not work properly on my system
sesameData
sesameDataCache
sesame
ExperimentalHub
updated 4 months ago by
alyssa-daniel
• 0 • written 5 months ago by
alos_diallo
• 0
0
votes
3
replies
754
views
Difficulty creating summarized experiment
sesame
sesameData
updated 17 months ago by
zhouwanding
▴ 10 • written 17 months ago by
jasmine_chappell
• 0
5
votes
2
replies
1.1k
views
How to build a GRangesList where each GRanges element is a CDS coordinate of gene transcripts?
GenomicRanges
sesame
sesameData
GenomicFeatures
2.6 years ago
Pratik Mehta
▴ 10
4 results • Page
1 of 1
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Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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