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Kevin Blighe
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2.4 years ago
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12 months ago
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Clara
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updated 5 months ago by
ATpoint
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written 5 months ago by
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updated 6.8 years ago by
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written 6.8 years ago by
hrishi27n
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zli1
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updated 5.4 years ago by
Gordon Smyth
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written 5.4 years ago by
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updated 2.2 years ago by
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written 2.2 years ago by
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14 months ago
cathalgking
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updated 2.9 years ago by
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written 2.9 years ago by
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Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★
4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
•
0
Thank you for your comment!
1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right?
Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★
28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★
1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
•
0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
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