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shiny EBImage

21 months ago Wolfgang Huber ★ 13k

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updated 2.1 years ago by anna.stanislawska • 0 • written 2.1 years ago by Mari • 0

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4.0 years ago manninm • 0

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5.0 years ago Aaron Lun ★ 28k

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updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by hinkel2 • 0

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rtracklayer browsegenome shiny

updated 5.5 years ago by Michael Lawrence ★ 11k • written 5.5 years ago by vivek82 • 0

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6.1 years ago lloyd.izard ▴ 80

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SC3 single-cell shiny

updated 6.9 years ago by Vladimir Kiselev ▴ 150 • written 6.9 years ago by cfustero ▴ 20

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7.5 years ago • updated 7.3 years ago Yuan Tian ▴ 90

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updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by bhakti.dwivedi • 0

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updated 8.0 years ago by Andrzej Oleś ▴ 750 • written 8.0 years ago by christopher.clarskon15 ▴ 20

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8.1 years ago Vincent J. Carey, Jr. 6.7k

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shiny network interactions

9.5 years ago pshannon ▴ 100

17 results • Page 1 of 1

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Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k

You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…

Comment: [DiffBind] Obtaining normalization factors by Henry ▴ 10

I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.

Answer: Memory errors using read.bismark? by Peter Hickey ▴ 690

Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by Peter Hickey ▴ 690

Superficially, your issue is similar to [https://github.com/hansenlab/bsseq/issues/136](https://github.com/hansenlab/bsseq/issues/136). You…

Votes

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA

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