Bioconductor Shortread

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package installation shortread dependency

updated 4.9 years ago by January Weiner ▴ 240 • written 5.9 years ago by joseph.elsherbini ▴ 60

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1.9k

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rnaseqgeneedgerql shortread Rsubread

updated 5.0 years ago by Aspie96 ▴ 60 • written 5.0 years ago by Raito92 ▴ 60

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shortread fastq write

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by francesca.defilippis ▴ 100

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shortread rsubread ensembldb Tutorial

8.0 years ago phil.chapman ▴ 150

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metagenomics chipseq biomart shortread convert biomaRt

9.6 years ago patrick.schordert ▴ 30

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shortread

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by cookie ▴ 20

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shortread

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by chapmandu2 ▴ 20

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biostrings shortread

updated 7.0 years ago by Hervé Pagès 16k • written 7.0 years ago by jma1991 ▴ 70

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iranges shortread Biostrings

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by pavitrarc ▴ 20

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shortread pacbio fastq

updated 6.2 years ago by Martin Morgan 25k • written 6.2 years ago by benjamin.j.callahan ▴ 50

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NanoporeRNASeq LongRead Normalization ShortRead IlluminaRNASeq

14 months ago Bernardo ▴ 10

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1.7k

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bioconductor shortread bam file nucler

updated 6.2 years ago by Dario Strbenac ★ 1.5k • written 6.2 years ago by jfgout ▴ 10

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shortread fastq

updated 7.3 years ago by James W. MacDonald 65k • written 7.3 years ago by Frocha ▴ 20

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ShortRead

written 3.2 years ago by Daniel.Berner@unibas.ch ▴ 90

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shortread fastq

9.0 years ago danova_fr ▴ 20

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GenomicFiles ShortRead Rsamtools

3.2 years ago robmaz77 ▴ 20

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shortread fastqSteamerList

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by simonas.juzenas ▴ 10

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shortread

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by Radek ▴ 90

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shortread

7.6 years ago David ▴ 860

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shortread

8.9 years ago danova_fr ▴ 20

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ShortRead FastqStreamer

6.4 years ago ioannis.vardaxis ▴ 30

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1.2k

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shortread biocparallel

updated 6.2 years ago by Martin Morgan 25k • written 6.2 years ago by Vivek.b ▴ 100

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shortread

updated 3.2 years ago by robmaz77 ▴ 20 • written 8.8 years ago by Arne Muller ▴ 20

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shortread

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by phil.chapman ▴ 150

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1.4k

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shortread biostrings

updated 5.5 years ago by Gordon Smyth 50k • written 5.5 years ago by ferbecneu • 0

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shortread readaligned

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by kspata ▴ 10

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illumina shortread

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by kelvinfrog75 • 0

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sequencing biostrings shortread

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by steven.everman ▴ 10

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ShortRead nanopore

24 months ago kent.riemondy ▴ 20

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847

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scruff Install ShortRead

updated 19 months ago by shepherl 3.8k • written 19 months ago by Jackson • 0

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1.0k

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ShortRead ShortRead

updated 12.3 years ago by Martin Morgan 25k • written 12.3 years ago by Kunbin Qu ▴ 40

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ShortRead Rsamtools ShortRead Rsamtools

updated 12.2 years ago by Martin Morgan 25k • written 12.2 years ago by Wolfgang Raffelsberger ▴ 60

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638

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ShortRead ShortRead

updated 12.1 years ago by Martin Morgan 25k • written 12.1 years ago by wang peter ★ 2.0k

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692

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Cancer ShortRead Cancer ShortRead

12.1 years ago Martin Morgan 25k

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764

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ShortRead ShortRead

updated 11.9 years ago by Martin Morgan 25k • written 11.9 years ago by talshay ▴ 10

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822

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ShortRead ShortRead

updated 11.8 years ago by Martin Morgan 25k • written 11.8 years ago by Fatemehsadat Seyednasrollah ▴ 260

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822

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ShortRead ShortRead

updated 11.7 years ago by Martin Morgan 25k • written 11.7 years ago by wang peter ★ 2.0k

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1.1k

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Sequencing ShortRead Sequencing ShortRead

updated 11.5 years ago by Martin Morgan 25k • written 11.5 years ago by Zhenyu Xu ▴ 10

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945

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ShortRead ShortRead

updated 11.4 years ago by Martin Morgan 25k • written 11.4 years ago by wang peter ★ 2.0k

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807

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Alignment ShortRead Alignment ShortRead

11.4 years ago Maria Dermit ▴ 10

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2.5k

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ShortRead ShortRead

updated 11.3 years ago by Martin Morgan 25k • written 11.3 years ago by Ivan Gregoretti ▴ 310

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6.0k

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ShortRead ShortRead

updated 11.2 years ago by Martin Morgan 25k • written 11.2 years ago by Ivan Gregoretti ▴ 310

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2.6k

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Preprocessing ShortRead Preprocessing ShortRead

updated 11.2 years ago by Martin Morgan 25k • written 11.2 years ago by Noah Dowell ▴ 410

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1.1k

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Preprocessing ShortRead Preprocessing ShortRead

11.2 years ago Noah Dowell ▴ 410

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2.2k

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ShortRead BiocInstaller ShortRead BiocInstaller

updated 11.0 years ago by Dan Tenenbaum ★ 8.2k • written 11.0 years ago by carol white ▴ 680

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1.5k

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Sequencing rtracklayer ShortRead GenomicRanges Sequencing rtracklayer ShortRead

updated 10.6 years ago by Valerie Obenchain ★ 6.8k • written 10.6 years ago by Sam McInturf ▴ 300

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PROcess ShortRead PROcess ShortRead

updated 10.4 years ago by Martin Morgan 25k • written 10.4 years ago by Sam McInturf ▴ 300

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970

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GO ShortRead GO ShortRead

10.0 years ago Guest User ★ 13k

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shortread readAligned reverseComplement ScanBamParam

9.3 years ago jdavison ▴ 10

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2.7k

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ShortRead

updated 9.3 years ago by Valerie Obenchain ★ 6.8k • written 9.3 years ago by newmanss • 0

50 results • Page 1 of 1

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Answer: Memory errors using read.bismark? by Peter Hickey ▴ 690

Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by Peter Hickey ▴ 690

Superficially, your issue is similar to [https://github.com/hansenlab/bsseq/issues/136](https://github.com/hansenlab/bsseq/issues/136). You…

Answer: Reading huge bismark coverage files using bbseq::read.bismark by Peter Hickey ▴ 690

I'm one of the **bsseq** developers. Are you able to share one of your files with me (e.g., via Dropbox, Google Drive, OneDrive, etc.). Tha…

Comment: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var by daniel.carbajo • 0

Yeah I think this is the way to go! How can I pass `col_list` here though? `Heatmap` does not accept a list of color vectors... How can I m…

Answer: The issue with SGSeq_analyzeFeatures() returns errors on BAM files by kamryncole1963 • 0

https://support.bioconductor.org/p/85837/[tunnel rush][1] Refer to this link, it may help. [1]: https://tunnelrush3.com

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Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var