Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
shrna
•
reset
0
votes
2
replies
1.7k
views
Using edgeR for small shRNA-seq screen analysis
edger
shrna
7.8 years ago
sirintra
▴ 10
2
votes
2
replies
2.1k
views
Analysis of shRNA screen data
shrna
edger
deseq2
differential expression
normalized counts
8.4 years ago
Jane Merlevede
▴ 90
1
vote
1
reply
1.1k
views
limma for shRNA dropout screen analysis?
limma
gmap
shRNA
dropout screen
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
Anna Dvorkin
▴ 40
4
votes
4
replies
1.8k
views
edgeR:processAmplicons barcode match only 57% when it should be 100% -- I artificially inserted them -- are there other assumptions
edgeR
processamplicons
shrna
updated 9.0 years ago by
thomas.leete
• 0 • written 9.2 years ago by
Anne Deslattes Mays
▴ 10
0
votes
5
replies
2.9k
views
example fastq file, sampleAnnotaition and Hairpin file for shRNAseq/EdgeR tool
shRNAseq
edgeR
shRNA
updated 9.2 years ago by
Gordon Smyth
52k • written 9.2 years ago by
KB
▴ 50
5 results • Page
1 of 1
Recent ...
Replies
Comment: lfcShrink and alpha value
by
cropero
• 0
Thank you so much! Would that be equivalent to perform `res <- results(dds, contrast = c("conditions", "wild_type_114_2_no_carbon", "wild_t…
Comment: pathview - multiple states
by
Philippine
• 0
Thank you! Here a subset of genes that really works with "ame04145". data <- data.frame( EntrezID = c(100577548, 100577764, 406…
Comment: pathview - multiple states
by
Guido Hooiveld
★ 4.1k
A quick comment after I copied/pasted your code: when using `geneList1` in the 3rd code chunk I do **not** get a nice plot... I rather got …
Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Adam
• 0
Hi Aaron, Thanks a lot for your help! As you mentioned, I checked my data and it is "DelayedMatrix". I don't know the detailed differe…
Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Awards
• All
Popular Question
to
tombate94
• 0
Popular Question
to
Ou, Jianhong
★ 1.3k
Popular Question
to
mikat
• 0
Popular Question
to
joseph.joonsang
• 0
Popular Question
to
Hans-Ulrich Klein
▴ 330
Locations
• All
France,
18 minutes ago
Canada,
37 minutes ago
South Korea,
1 hour ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 428 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6