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Mike Smith
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Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
by
lsoriaga2
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0
Hello,
This error seems to have returned (R 4.2.2 BioC 3.16.0)?
The same code block worked without error until today.
```
> library(Sign…
Answer: RUVr batch correction doubling number of DEGs
by
Michael Love
39k
No, this sounds like RUV is helping to reduce variance due to unaccounted for batch effects. So it’s helping.
Comment: Ascona Workshop “Biological systems: from first principles to data-driven model
by
Wolfgang Huber
13k
Dear Liam,
it's bi-annual, we just submitted a proposal. If it works out, it'll be in 2024, and as it looks now, in early September.
Theme:…
Comment: IHW for multiple regression
by
Wolfgang Huber
13k
Indeed, for the two-sided t-test (and similar), the sign of the test statistic is independent of the p-value under the null hypothesis, and…
Comment: edgeR supports continuous covariates?
by
Jeffcgen2000
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0
Hi Yunshun Chen and Gordon Smyth,
does edgeR support mixed model? (https://en.wikipedia.org/wiki/Mixed_model)
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