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updated 4.8 years ago by Rory Stark ★ 5.1k • written 4.8 years ago by Lavorgna Giovanni ▴ 80

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8.0 years ago Rory Stark ★ 5.1k

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Comment: Why is DMRcate not available for Bioconductor version 3.18? by Gordon Smyth 48k

That's a good question. On the DMRcate landing page, one can see that the "Source package" file is missing, meaning that installation in Un…

Comment: Unlog transformed data in DESeq2 by Gordon Smyth 48k

The RUVIII people themselves use limma ( https://doi.org/10.1093/nar/gkz433 ). But please, post your question as a question. That would be …

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Yes I see that. So, to expand, if strong grouping IS seen, then the ```~condition``` approach is not appropriate, as will likely lead to po…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

This seems a very odd response to what seemed to be a very reasonable question

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

I'm not using Chat GPT. I've been discussing at length this issue of having multiple samples derived from the same patients with many colle…

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