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Comment: Does it make sense to have so many statistically significant gene differentially
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Sep
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0
Thank you for your reply.
I did the same, and I wanted to ask if the following plot make sense or I did sth wrong?
The plot is for the gen…
Answer: How to change the dot size in plotPCA?
by
hediatnani
•
0
plotPCA(rld, intgroup = "Tissue") + geom_point(size=1)
Comment: How to extract proteins from PCs in plot_pca in DEP package
by
Basti
▴
700
Which information do you want precisely ? plot_pca is just a wrapper for PCA visualization, but it applies prcomp to perform PCA : https://…
Comment: [limma::kegga] Pathway names all NA
by
Gordon Smyth
47k
The reason why installing limma didn't solve the problem was because you were using Bioconductor 3.15 rather than the current release, whic…
Comment: [limma::kegga] Pathway names all NA
by
andrewsm
•
0
Thank you Gordon for the quick response. I saw something along those lines in the NEWS notes so did try
```{r}
BiocManager:install("limma"…
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