Showing : siggenes • reset
2
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4
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1.3k
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Interprentation of appropriate statistical test
samr SAM siggenes bioconductor differential gene expression
9.2 years ago svlachavas ▴ 830
2
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2
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1.4k
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SAM/siggenes: Differential gene expression analysis
SAM siggenes microarray gene expression sam
7.3 years ago Brian Smith ▴ 120
1
vote
8
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7.1k
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Limma, SAM and Fold Change Calculation
affy limma gcrma siggenes
updated 7.1 years ago by 50k • written 16.8 years ago by ▴ 80
1
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0
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1.8k
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DE analysis of PCR array [was: dataset dim for siggenes]
qPCR Normalization multtest limma siggenes
9.6 years ago • updated 7.3 years ago Gordon Smyth 50k
0
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2
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2.0k
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samr - extract genes from siggenes.table
siggenes siggenes
updated 13.2 years ago by ▴ 340 • written 13.2 years ago by ★ 1.5k
0
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1
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1.1k
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understanding siggenes results
miRNA affy siggenes miRNA affy siggenes
updated 12.9 years ago by 65k • written 12.9 years ago by ★ 1.5k
0
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1
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1.2k
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siggenes parameters
siggenes siggenes
12.8 years ago Assa Yeroslaviz ★ 1.5k
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0
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890
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Bioconductor
Microarray Normalization Cancer multtest siggenes convert Microarray Normalization Cancer
20.5 years ago James W. MacDonald 65k
0
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1
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1.0k
views
SAM in siggenes package
Microarray Cancer siggenes Microarray Cancer siggenes
updated 20.4 years ago by ▴ 900 • written 20.4 years ago by 65k
0
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1
reply
1.0k
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SAM output in siggenes package
siggenes siggenes
updated 20.3 years ago by 65k • written 20.3 years ago by ▴ 90
0
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7
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1.6k
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Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
20.2 years ago Matthew Hannah ▴ 940
0
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2
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1.4k
views
warning messages in gcrma
Microarray Normalization Cancer moe430a moe430b cdf probe affy gcrma siggenes GeneSpring
updated 20.1 years ago by 65k • written 20.1 years ago by ▴ 210
0
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3
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991
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SAM : warning messages problem
siggenes siggenes
updated 20.1 years ago by 65k • written 20.1 years ago by ▴ 90
0
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3
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1.1k
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Confusion for choosing package for microarray data analysis
Microarray limma siggenes marray Microarray limma siggenes marray
updated 20.1 years ago by ▴ 140 • written 20.1 years ago by ▴ 60
0
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0
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783
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downstream analysis of differentially expressed genes
Microarray Cancer multtest affy limma siggenes factDesign Microarray Cancer multtest
20.0 years ago James W. MacDonald 65k
0
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0
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957
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SAM: the fudge factor in Siggenes and Excel
siggenes ASSIGN siggenes ASSIGN
19.6 years ago Caimiao Wei ▴ 100
0
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4
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1.1k
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using mat.samp in siggenes
siggenes siggenes
updated 19.6 years ago by ▴ 900 • written 19.6 years ago by ▴ 20
0
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3
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1.0k
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about siggenes
siggenes siggenes
updated 19.6 years ago by ▴ 900 • written 19.6 years ago by ▴ 20
0
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0
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722
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calling SAM using siggenes package
siggenes siggenes
19.5 years ago saran.2.vardhanabhuti@gsk.com ▴ 10
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2
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1.3k
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gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 130
0
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0
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1.0k
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Questions of Significance Analysis of Microarrays(SAM){siggenes}
siggenes siggenes
19.4 years ago yzu ▴ 10
0
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0
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900
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Questions of Significance Analysis of Microarrays(SAM){siggenes}
siggenes siggenes
19.4 years ago Holger Schwender ▴ 900
0
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0
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688
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Siggenes output only gives NAs?
siggenes siggenes
19.3 years ago Tiago R Magalhaes ▴ 60
0
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1
reply
940
views
Error message from running SAM for one-class case(siggenes)
siggenes siggenes
19.3 years ago Fangxin Hong ▴ 810
0
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3
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1.1k
views
problem with siggenes
Pharmacogenomics siggenes Pharmacogenomics siggenes
updated 19.3 years ago by ▴ 900 • written 19.3 years ago by ▴ 130
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2
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2.7k
views
Could you help me
siggenes siggenes
updated 19.2 years ago by ▴ 900 • written 19.2 years ago by ▴ 10
0
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0
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663
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Gene selection: association with linear response and correction for multi test
Regression limma siggenes Regression limma siggenes
19.1 years ago david neil hayes ▴ 70
0
votes
1
reply
988
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annotation problem with hgu133plus2
Annotation GO hgu133plus2 cdf annotate affy siggenes annaffy Annotation GO hgu133plus2
18.9 years ago Yanqin Yang ▴ 250
0
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0
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829
views
annotation problem with hgu133plus2
GO cdf annotate reposTools affy siggenes annaffy GO cdf annotate reposTools affy
18.9 years ago Seth Falcon ★ 7.4k
0
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1
reply
1.2k
views
siggenes SAM FDR, # false discrepancies
siggenes siggenes
18.9 years ago Jacob Michaelson ▴ 320
0
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0
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851
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
18.8 years ago Dick Beyer ★ 1.4k
0
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1
reply
1.1k
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 18.8 years ago by ★ 1.4k • written 18.8 years ago by ★ 1.1k
0
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1
reply
725
views
Siggenes: How to deal with one treatment - five controls problem?
Microarray siggenes Microarray siggenes
updated 18.7 years ago by ▴ 190 • written 18.7 years ago by ▴ 10
0
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1
reply
837
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siggenes error with rma & wilcoxon test
siggenes siggenes
updated 18.5 years ago by ▴ 900 • written 18.5 years ago by ▴ 250
0
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3
replies
965
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passing my data to siggenes package
multtest siggenes multtest siggenes
updated 18.5 years ago by ▴ 900 • written 18.5 years ago by ▴ 140
0
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1
reply
758
views
siggenes package
siggenes siggenes
updated 18.5 years ago by ▴ 900 • written 18.5 years ago by ▴ 140
0
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3
replies
1.1k
views
attributes of SAM files
GUI siggenes GUI siggenes
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 100
0
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0
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717
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called genes after SAM anaylsis
siggenes siggenes
18.5 years ago Holger Schwender ▴ 900
0
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4
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1.4k
views
how to get samoutput$mat.fdr and samoutput$delta from SAM object ? - help
siggenes siggenes
updated 18.3 years ago by 21k • written 18.3 years ago by ★ 1.1k
0
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2
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1.1k
views
siggenes permutation count problem
Normalization affy siggenes Normalization affy siggenes
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 340
0
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1
reply
1.5k
views
SAM output explanation and an FDR question
siggenes siggenes
updated 18.3 years ago by ★ 6.0k • written 18.3 years ago by ▴ 110
0
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4
replies
1.4k
views
siggenes error message about sam.plot2
siggenes siggenes
18.1 years ago He, Yiwen NIH/CIT ▴ 360
0
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1
reply
1.0k
views
SAM and siggenes: 4 questions
siggenes siggenes
updated 18.1 years ago by ▴ 900 • written 18.1 years ago by ▴ 520
0
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0
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853
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siggenes R-fold question
siggenes siggenes
17.8 years ago wxu@msi.umn.edu ▴ 220
0
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0
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785
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SAM with censored survival data on exprSet
Survival siggenes Survival siggenes
17.6 years ago mpg33@drexel.edu ▴ 90
0
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3
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2.0k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 80
0
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0
replies
811
views
Note in check report was: [Bioc-devel] Recent changes in R
Cancer annotate genefilter siggenes Cancer annotate genefilter siggenes
17.0 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
898
views
trouble extracting R code from vignette using example from www.bioconductor.org
siggenes siggenes
16.7 years ago Kimpel, Mark W ▴ 890
0
votes
5
replies
1.4k
views
normalisation + sam
Preprocessing siggenes Preprocessing siggenes
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 60
0
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3
replies
2.3k
views
SAM analysis : samr package vs siggenes package
siggenes siggenes
updated 16.0 years ago by ▴ 900 • written 16.0 years ago by ▴ 30
50 results • Page 1 of 1
Recent ...
Replies
Comment: Trying to use enrichGO by fernanda.backsouza • 0
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …
Comment: Trying to use enrichGO by fernanda.backsouza • 0
I'm new here, but its better now?
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…
Comment: Trying to use enrichGO by fernanda.backsouza • 0
Thank you for yout time guido, 1) When the pvalueCutoff = 1 nothing change. 2) output from > `str(ortologos_filtrados) data.frame':…
Votes
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
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