Bioconductor Signer

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signeR mutationcountmatrix expandedvcf

3.4 years ago Nikita • 0

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712

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signeR getseq

updated 5.0 years ago by renan.valieris ▴ 10 • written 5.0 years ago by TRASA • 0

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904

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software error signeR

5.3 years ago Dan • 0

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signer install error

updated 5.3 years ago by shepherl 3.8k • written 5.3 years ago by taha.valizadeh • 0

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signeR

updated 7.3 years ago by renan.valieris ▴ 10 • written 7.3 years ago by Bogdan ▴ 670

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signeR

updated 7.4 years ago by renan.valieris ▴ 10 • written 7.4 years ago by Miguel Juliá • 0

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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

Answer: get BM error by James W. MacDonald 65k

The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…

Answer: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…

Comment: Different Shrunk Log2FC according with reference by Michael Love 41k

I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Votes

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

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