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parsing discrete colors in pathview KEGG
SIM
pathview
SIM
pathview
10.1 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.1k
views
Farms/Call.INI using oligo package?
probe
affy
oligo
SIM
farms
probe
affy
oligo
SIM
farms
10.4 years ago
Djork Clevert
▴ 210
0
votes
4
replies
3.2k
views
Pathview for global and overview maps Re: using pathview about hsa01100
Pathways
graph
PROcess
SIM
gage
pathview
Pathways
graph
PROcess
SIM
gage
pathview
updated 10.6 years ago by
Ed
▴ 230 • written 10.6 years ago by
Luo Weijun
★ 1.6k
0
votes
0
replies
949
views
SNP6.0 annotation
SNP
Annotation
probe
annotate
SIM
SNP
Annotation
probe
annotate
SIM
11.4 years ago
Guest User
★ 13k
0
votes
1
reply
1.5k
views
KEGGgraph bug
Pathways
Organism
SIM
KEGGgraph
Pathways
Organism
SIM
KEGGgraph
updated 14.3 years ago by
Marc Carlson
★ 7.2k • written 14.3 years ago by
Fraser Sim
▴ 270
0
votes
6
replies
1.4k
views
installation of Rgraphviz
Rgraphviz
SIM
Rgraphviz
SIM
updated 14.9 years ago by
Patrick Aboyoun
★ 1.6k • written 14.9 years ago by
ravi
▴ 130
0
votes
8
replies
1.6k
views
FW: Graphviz in Vista64
Rgraphviz
SIM
Rgraphviz
SIM
updated 15.1 years ago by
Martin Morgan
25k • written 15.1 years ago by
Sim, Fraser
▴ 350
0
votes
0
replies
1.5k
views
Cutoff to use for IQR filtering in genefilter
genefilter
affy
limma
GeneSpring
affylmGUI
GLAD
SIM
genefilter
affy
limma
GeneSpring
15.8 years ago
Mark Cowley
▴ 400
8 results • Page
1 of 1
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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