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sim
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reset
0
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2.1k
views
parsing discrete colors in pathview KEGG
SIM
pathview
SIM
pathview
10.2 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.1k
views
Farms/Call.INI using oligo package?
probe
affy
oligo
SIM
farms
probe
affy
oligo
SIM
farms
10.4 years ago
Djork Clevert
▴ 210
0
votes
4
replies
3.2k
views
Pathview for global and overview maps Re: using pathview about hsa01100
Pathways
graph
PROcess
SIM
gage
pathview
Pathways
graph
PROcess
SIM
gage
pathview
updated 10.7 years ago by
Ed
▴ 230 • written 10.7 years ago by
Luo Weijun
★ 1.6k
0
votes
0
replies
970
views
SNP6.0 annotation
SNP
Annotation
probe
annotate
SIM
SNP
Annotation
probe
annotate
SIM
11.5 years ago
Guest User
★ 13k
0
votes
1
reply
1.5k
views
KEGGgraph bug
Pathways
Organism
SIM
KEGGgraph
Pathways
Organism
SIM
KEGGgraph
updated 14.4 years ago by
Marc Carlson
★ 7.2k • written 14.4 years ago by
Fraser Sim
▴ 270
0
votes
6
replies
1.5k
views
installation of Rgraphviz
Rgraphviz
SIM
Rgraphviz
SIM
updated 15.0 years ago by
Patrick Aboyoun
★ 1.6k • written 15.0 years ago by
ravi
▴ 130
0
votes
8
replies
1.6k
views
FW: Graphviz in Vista64
Rgraphviz
SIM
Rgraphviz
SIM
updated 15.2 years ago by
Martin Morgan
25k • written 15.2 years ago by
Sim, Fraser
▴ 350
0
votes
0
replies
1.5k
views
Cutoff to use for IQR filtering in genefilter
genefilter
affy
limma
GeneSpring
affylmGUI
GLAD
SIM
genefilter
affy
limma
GeneSpring
15.8 years ago
Mark Cowley
▴ 400
8 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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